PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2215s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 1288aa MW: 148541 Da PI: 5.9169

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2215s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	191.2	6.6e-59	7	342	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 + L+e A+a++ g+l a++lL++++ l+s + +++++++ f+eAL +r+++ ++ lp ++s n ++ ++ SapurV1A.2215s0050.1.p 7 NKLVESAKAIEGGNLDVAESLLKEIRCLVSTEPnIATRKVVKIFAEALVRRVNGLHPRYP--LPLVPSS--NLEDFYNY-----VFY 84 689***********************9888846***************333322..3333332..34444332.....345 PP GRAS 89 PilkfshltaNqaIle.avegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 P++ fs++t+ +aI ++g++ +H+iDf+++ + W L++ Las+p+g ps+R+T ++++ s s + l++++ +L++ Ae+l+ SapurV1A.2215s0050.1.p 85 PFYWFSYFTTAHAIHAfRISGNKPLHVIDFSVMlYTSLWYDLMRDLASQPGGLPSFRLTSIVPKLSRSFDYLQQIRCKLTRAAERLR 171 **********87368999*****9747899*********************9999**************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 v+fe + +va++ +++ + + + r r++ + ++++l+P+++++veqeadhn+++F++rf+++ SapurV1A.2215s0050.1.p 172 VDFELRHVVANNAKEI--------------IECCESTVRRT---------REDEMIVMNDLKPDIMIIVEQEADHNGSDFMDRFVKS 235 ***977766665..............55555555554.........223345679************************ PP GRAS 261 leyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 ++yys++f sl e k+ r+ + + r ++r+i nvvaceg +r+erhe+l++W+erl +aGF+p++ + ++l+ + k SapurV1A.2215s0050.1.p 236 FQYYSTIFHSLeEDKFYRDVDGMELWKRN-FRRQIGNVVACEGIDRVERHESLHQWQERLLQAGFHPMQQWW----NNDRLIFQLK- 316 *******888888888888777777.*********************************97544....3456666666. PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 yr++e++g +l+ +d pL+++S+W+ SapurV1A.2215s0050.1.p 317 --YRIQEKDGHPMLYRHDCPLLVTSVWK 342 ..8**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.279	1	329	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-56	7	342	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	10.685	672	724	IPR003656	Zinc finger, BED-type
SMART	SM00614	3.5E-10	672	723	IPR003656	Zinc finger, BED-type
Pfam	PF02892	1.7E-4	675	720	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.79E-6	675	723	No hit	No description
SuperFamily	SSF53098	1.14E-45	812	1282	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	5.2E-18	1054	1146	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	1.6E-16	1199	1281	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1288 aa Download sequence Send to blast
MADLLFNKLV ESAKAIEGGN LDVAESLLKE IRCLVSTEPN IATRKVVKIF AEALVRRVNG 60 LHPRYPLPLV PSSNLEDFYN YVFYPFYWFS YFTTAHAIHA FRISGNKPLH VIDFSVMLYT 120 SLWYDLMRDL ASQPGGLPSF RLTSIVPKLS RSFDYLQQIR CKLTRAAERL RVDFELRHVV 180 ANNAKEIIEC CESTVRRTRE DEMIVMNDLK PDIMIIVEQE ADHNGSDFMD RFVKSFQYYS 240 TIFHSLEEDK FYRDVDGMEL WKRNFRRQIG NVVACEGIDR VERHESLHQW QERLLQAGFH 300 PMQQWWNNDR LIFQLKYRIQ EKDGHPMLYR HDCPLLVTSV WKHSDPSQFS NGPFTLQDVT 360 MFSPDEKSDL MTSSESESED EQADYREDNM LSPRGLLMNQ IAASANLHDI LEYVCHVHKF 420 PLALTWISHR EEGNANSNEK RILQIEDMAC YVNSCWKNRF VDGYLECYIK EGQGIAGKAL 480 QSNLHFVPRI SQLDVVDYPF LDYANKYSLH AAVAIKLTSA CTSTSISIND YVVEFFLPPH 540 LKESSEQHLS INGLLRTLQK KCGHLWKFWC METNKLDGSR EMLGEVGECS IPPAAFSGSS 600 QLVLSDGAPS MNEIMELDIY NQTSDGMETH EPLEQEIREQ YAMAAPAINA GIELPSNGNA 660 SAIRNMPISK QRKVSRVWEG FMKHEGKHGE AWAICKYCNK RYRAESTRGT SNLHKHLQKC 720 LSKRQGGAEQ QSSPLVESGD LITSSVQRNL VLDQEGSHLN IARMMIKHGY PLDMVQHEFF 780 RTFVENLQPM FKLHSKDMVE ADVLVVYRQE KEKLIKCFDN LSCLFFLTIE LLSSDDRNMT 840 YCCLTLHFID DEWEQKKKIL AFRNLQGDYD ADTIQEIIKS VIIEWSIGKN LHFIWLNIAP 900 PNDQMNGELQ SKLSDQDSLI NGDACFLSSY NQIAHLLIQD GLFKIKSVLC KIRESIAYFN 960 GTQDRREMFQ KAINQLKLQD KQKASLDVPG RWDTTFSMLE NALDFRNAFA YLEQTDGDFR 1020 VNPSVEEWNT ATIILDCLKK LILQESVRNA STGVELYFLN VCCVYKNLIQ WRRSQHTFVR 1080 SIVDTMLVRF DEFWNKFGLA LGILTILNPC FKLDVVEYGY GQIYGSDANL FLPELHNDLK 1140 RVYHRYANDS SNPAASTSTL ADVNCCVSFN PTSEYMFQGF RAWRKHKYES NSLDSQKVEL 1200 DQYYLEQPPE NLSEDYNVLE WWHANAPRFP ILGRMARDFF AIPISTIVSE SSAAEAVKMS 1260 STFNDARPEI IEALVCVRDW LESPERK*

Sequence ? help Back to Top

Protein Sequence Length: 1288 aa Download sequence Send to blast

MADLLFNKLV ESAKAIEGGN LDVAESLLKE IRCLVSTEPN IATRKVVKIF AEALVRRVNG  60
LHPRYPLPLV PSSNLEDFYN YVFYPFYWFS YFTTAHAIHA FRISGNKPLH VIDFSVMLYT  120
SLWYDLMRDL ASQPGGLPSF RLTSIVPKLS RSFDYLQQIR CKLTRAAERL RVDFELRHVV  180
ANNAKEIIEC CESTVRRTRE DEMIVMNDLK PDIMIIVEQE ADHNGSDFMD RFVKSFQYYS  240
TIFHSLEEDK FYRDVDGMEL WKRNFRRQIG NVVACEGIDR VERHESLHQW QERLLQAGFH  300
PMQQWWNNDR LIFQLKYRIQ EKDGHPMLYR HDCPLLVTSV WKHSDPSQFS NGPFTLQDVT  360
MFSPDEKSDL MTSSESESED EQADYREDNM LSPRGLLMNQ IAASANLHDI LEYVCHVHKF  420
PLALTWISHR EEGNANSNEK RILQIEDMAC YVNSCWKNRF VDGYLECYIK EGQGIAGKAL  480
QSNLHFVPRI SQLDVVDYPF LDYANKYSLH AAVAIKLTSA CTSTSISIND YVVEFFLPPH  540
LKESSEQHLS INGLLRTLQK KCGHLWKFWC METNKLDGSR EMLGEVGECS IPPAAFSGSS  600
QLVLSDGAPS MNEIMELDIY NQTSDGMETH EPLEQEIREQ YAMAAPAINA GIELPSNGNA  660
SAIRNMPISK QRKVSRVWEG FMKHEGKHGE AWAICKYCNK RYRAESTRGT SNLHKHLQKC  720
LSKRQGGAEQ QSSPLVESGD LITSSVQRNL VLDQEGSHLN IARMMIKHGY PLDMVQHEFF  780
RTFVENLQPM FKLHSKDMVE ADVLVVYRQE KEKLIKCFDN LSCLFFLTIE LLSSDDRNMT  840
YCCLTLHFID DEWEQKKKIL AFRNLQGDYD ADTIQEIIKS VIIEWSIGKN LHFIWLNIAP  900
PNDQMNGELQ SKLSDQDSLI NGDACFLSSY NQIAHLLIQD GLFKIKSVLC KIRESIAYFN  960
GTQDRREMFQ KAINQLKLQD KQKASLDVPG RWDTTFSMLE NALDFRNAFA YLEQTDGDFR  1020
VNPSVEEWNT ATIILDCLKK LILQESVRNA STGVELYFLN VCCVYKNLIQ WRRSQHTFVR  1080
SIVDTMLVRF DEFWNKFGLA LGILTILNPC FKLDVVEYGY GQIYGSDANL FLPELHNDLK  1140
RVYHRYANDS SNPAASTSTL ADVNCCVSFN PTSEYMFQGF RAWRKHKYES NSLDSQKVEL  1200
DQYYLEQPPE NLSEDYNVLE WWHANAPRFP ILGRMARDFF AIPISTIVSE SSAAEAVKMS  1260
STFNDARPEI IEALVCVRDW LESPERK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-19	11	341	25	378	Protein SCARECROW
5b3h_A	9e-20	11	341	24	377	Protein SCARECROW
5b3h_D	9e-20	11	341	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2215s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213918	0.0	AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443083.1	0.0	uncharacterized protein LOC7458894
STRING	POPTR_0016s02770.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-61	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2215s0050.1.p