PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2223s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 217aa    MW: 24684.1 Da    PI: 7.5077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2223s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-092474355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            +  +++E++RR+++++ +++L +llP+ +    ++  +  +   +A++YIk L+
  SapurV1A.2223s0040.1.p 24 TERKIVEKNRRNQMKTLYSNLNSLLPNrN---FKEAQTLPDQIDEAINYIKRLE 74
                            56789**********************55...77779999***********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5062173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-102191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-42378No hitNo description
Gene3DG3DSA:4.10.280.101.7E-92392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-52474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00132779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVAKTRGPTM ESSSSRSKIS STKTERKIVE KNRRNQMKTL YSNLNSLLPN RNFKEAQTLP  60
DQIDEAINYI KRLEEKLEKS REKRESLKRS RNRTHACTFD PIPPIATSKS PQLKIQEMGS  120
ALEIVLTCGL DNQFVFYEII KILHEEGVEV VSANFQALGD SIFHIVHAQM KESADGFGAA  180
KVTERLDRFI NGSKSEIELD SELWDFAICP DTNWEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ESLKRS
28792KRSRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2223s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002885.11e-121PREDICTED: transcription factor bHLH118-like isoform X4
TrEMBLU5FEU01e-115U5FEU0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13090.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-28bHLH family protein