PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2238s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20110.4 Da    PI: 10.7528
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2238s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.2e-211153345
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            ++++  rqvtfskRr+g++KKA+EL +LC++++a+i+fs+ gk
  SapurV1A.2238s0010.1.p 11 VKDSNSRQVTFSKRRTGVFKKANELATLCAVQIAIIVFSPGGK 53
                            689999**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.623161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-26173IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRRKIEIEM VKDSNSRQVT FSKRRTGVFK KANELATLCA VQIAIIVFSP GGKPFSFGHP  60
NVEFVAQRFL NRDKKPKVSI GSVVDSQQEA RLEKLNGQLS DALRKLHYER KRGEVLDKAM  120
KLKGSEPRLI GELNLDELQK LKGELEELRG KLRGSVTEME ASSSLLLLSK KPVREKHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2238s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305333.11e-106agamous-like MADS-box protein AGL29
TrEMBLB9H3Z41e-105B9H3Z4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s13600.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-37AGAMOUS-like 29