PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2301s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 360aa MW: 39852 Da PI: 4.4008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2301s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.5e-10	285	325	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR riN+++ L+ l+P+ +K++ +++Le Av+Y+k Lq SapurV1A.2301s0020.1.p 285 RKRRGRINERLKILQNLVPNG-----TKVDISTMLEDAVHYVKFLQ 325 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.284	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	276	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-11	280	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-11	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.32E-11	284	329	No hit	No description
Pfam	PF00010	3.2E-7	285	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MNTQAMGAFP DGEWDFGRMF SKEEPDSIPE LLDQCYIPHD TDEGLHFTIP SAFFPAPESD 60 VSMAEDESLF YSWHTLNPDL HFDSQESGNN SNSSSRVFLP YSSHELYFLN DSNPIQATNN 120 NSMSMDISIT DEKNTGLFVP LFPEIAMAET ACMNGDMSGE EIGNVDDNLK PADDDVLQLK 180 RKLDVPESTA NTLGDMKKKS RVTGNVQKSK KDALSGKNQK NLPNISHDEE ESNAGPDGQS 240 SRSCSSEDEN ASQDSDSKVS EALNSNGKTR ATRGAATDPQ SLYARKRRGR INERLKILQN 300 LVPNGTKVDI STMLEDAVHY VKFLQLQIKL LSSDDLWMYA PLAYNGIDIG LNQKLSRFL*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MNTQAMGAFP DGEWDFGRMF SKEEPDSIPE LLDQCYIPHD TDEGLHFTIP SAFFPAPESD  60
VSMAEDESLF YSWHTLNPDL HFDSQESGNN SNSSSRVFLP YSSHELYFLN DSNPIQATNN  120
NSMSMDISIT DEKNTGLFVP LFPEIAMAET ACMNGDMSGE EIGNVDDNLK PADDDVLQLK  180
RKLDVPESTA NTLGDMKKKS RVTGNVQKSK KDALSGKNQK NLPNISHDEE ESNAGPDGQS  240
SRSCSSEDEN ASQDSDSKVS EALNSNGKTR ATRGAATDPQ SLYARKRRGR INERLKILQN  300
LVPNGTKVDI STMLEDAVHY VKFLQLQIKL LSSDDLWMYA PLAYNGIDIG LNQKLSRFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2301s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999863.1	0.0	PREDICTED: transcription factor bHLH85-like
Swissprot	Q84WK0	5e-55	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A3N7EKH3	0.0	A0A3N7EKH3_POPTR; Uncharacterized protein
STRING	POPTR_0002s12000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	3e-57	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	SapurV1A.2301s0020.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]