PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2432s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 292aa    MW: 31578.2 Da    PI: 8.584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2432s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-203181256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++ GVr+++ +g+WvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  SapurV1A.2432s0010.1.p 31 RFVGVRQRP-SGKWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 81
                            589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-323188No hitNo description
SMARTSM003802.1E-363194IPR001471AP2/ERF domain
PfamPF008476.5E-153181IPR001471AP2/ERF domain
PROSITE profilePS5103220.4813188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-283189IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-203288IPR016177DNA-binding domain
PRINTSPR003671.4E-73243IPR001471AP2/ERF domain
PRINTSPR003671.4E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADPQTLKNS PNVTRLTTSK VQATKGPAAR RFVGVRQRPS GKWVAEIKDS SQRVRLWLGT  60
YDTPEEAARA YDEAARALRG ENARTNFASV NPNLNQSGSA PSSDGGLDLS GSDGRHVLSF  120
SPLKAKLSKN IQSIMARTTE NKSTKNRVSD HFAFANIFHF RSHPYQNPVD MKSIEKVVQP  180
SIIVPSASDH KPSCSWETSC VSDCSNEWIG FRPHGFDSDG SDIGEVSTVN SGQMTGWIDS  240
PDIKTCCGDP CSRSKRFMVS SSVVVPPTFS GPPSFCASSP SFCGSPFHVE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-142287371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2432s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035387.11e-177PREDICTED: uncharacterized protein LOC105133206
TrEMBLB9RDK41e-132B9RDK4_RICCO; Uncharacterized protein
STRINGPOPTR_0014s07280.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-18related to AP2 11