PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2485s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25432.8 Da    PI: 10.0806
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2485s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1876128456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             + ++t++q++ Le+ F +nr++  e +++LA++lg++ rq+++W+qN+Ra++k
  SapurV1A.2485s0010.1.p  76 KKRLTQDQVRLLERTFTSNRKLEPELKAQLANQLGVPPRQISIWYQNKRARWK 128
                             5569************************************************9 PP
2HD-ZIP_I/II106.42.1e-3475166293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +k+rl+++qv+lLE++F++++kLepe K++la++Lg+ prq+ +W+qn+RAR+kt++lE dy++L+ +++++ ++++rLe+ev++L+
  SapurV1A.2485s0010.1.p  75 RKKRLTQDQVRLLERTFTSNRKLEPELKAQLANQLGVPPRQISIWYQNKRARWKTQNLELDYNTLHLKLENVLADRRRLEREVAQLQ 161
                             8************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             eel++
  SapurV1A.2485s0010.1.p 162 EELRR 166
                             *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.14770130IPR001356Homeobox domain
SuperFamilySSF466891.8E-1773139IPR009057Homeodomain-like
SMARTSM003899.9E-1573134IPR001356Homeobox domain
CDDcd000862.46E-1375131No hitNo description
PfamPF000469.3E-1675128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-1977137IPR009057Homeodomain-like
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKGHQTKTFV INESIRNPFL AYKKGNELII FVNQRYFLYN YFPQLDPPMS KSMNLFHSQN  60
QQLSKHQNSS SSSSRKKRLT QDQVRLLERT FTSNRKLEPE LKAQLANQLG VPPRQISIWY  120
QNKRARWKTQ NLELDYNTLH LKLENVLADR RRLEREVAQL QEELRRAQQM VLDLNRGPAQ  180
PPVHVSSNSS LDEEAGGEVL QLDELYACWY SASGSAWG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2485s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029534.14e-91PREDICTED: homeobox-leucine zipper protein ATHB-52-like
SwissprotQ9FN295e-43ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A3N7HFD23e-87A0A3N7HFD2_POPTR; Uncharacterized protein
STRINGPOPTR_0011s11510.15e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.17e-42homeobox protein 52