PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2674s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 343aa    MW: 37790.2 Da    PI: 6.1993
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2674s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.96.7e-2943137186
                trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                             rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e++s 
  SapurV1A.2674s0010.1.p  43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigssQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETSIREETESY 129
                             8*********************9855666666669**************************************************** PP

                trihelix  79 cpyfdqle 86 
                             +++ ++l+
  SapurV1A.2674s0010.1.p 130 WVMRNDLR 137
                             ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-543108IPR009057Homeodomain-like
PfamPF138373.7E-1243132No hitNo description
PROSITE profilePS500906.443109IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALEQQLSLT STQNPVDGER TNGVDTNIRE GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE  60
NRVRRGRASG MGIGSSQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWET  120
SIREETESYW VMRNDLRRER KLPGFFDREV YDILDGGGGT VPGLALALAP SSTEVVAEEV  180
VFDSGRSAAA EDGLFSDFEQ EEGGGSPEAV VKEVQPIKVS VTEGFANPTP ISEKQYQPAS  240
RASEAQVPPN DKRPAPNPEM GSASHDDRKR KRFAIDGDEE TFSLQNHLID VLGRNGKMLT  300
AQLEAQNINF QLDREQRKDH ADGLVAVLNK LANALGKLAD KL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2674s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299351.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-123ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB9GMT20.0B9GMT2_POPTR; Trihelix family protein
STRINGPOPTR_0001s13060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-114Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]