PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2674s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 252aa MW: 27593.7 Da PI: 5.2781

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2674s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.6e-29	43	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e++s SapurV1A.2674s0010.2.p 43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigssQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETSIREETESY 129 8*******************9855666666669************************************************ PP trihelix 79 cpyfdqle 86 +++ ++l+ SapurV1A.2674s0010.2.p 130 WVMRNDLR 137 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.4	43	109	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.5E-5	43	108	IPR009057	Homeodomain-like
Pfam	PF13837	2.1E-12	43	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MALEQQLSLT STQNPVDGER TNGVDTNIRE GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE 60 NRVRRGRASG MGIGSSQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWET 120 SIREETESYW VMRNDLRRER KLPGFFDREV YDILDGGGGT VPGLALALAP SSTEVVAEEV 180 VFDSGRSAAA EDGLFSDFEQ EEGGGSPEAV VKEVQPIKVS VTEGFANPTP ISEKQYQPAS 240 RASEAQGNAQ I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2674s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299351.1	1e-164	trihelix transcription factor ASR3
Swissprot	Q8VZ20	5e-88	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	B9GMT2	1e-163	B9GMT2_POPTR; Trihelix family protein
STRING	POPTR_0001s13060.1	1e-164	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-90	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2674s0010.2.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]