PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2739s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 246aa    MW: 27127.5 Da    PI: 9.2354
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2739s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.8e-32105161158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hA+rR+Rg+gGrF
  SapurV1A.2739s0010.2.p 105 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 161
                             69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-36103164IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.826104164IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-28106161IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24107129IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860109129IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.6E-24138161IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MYCTGTLLYR SNLAPDAYFV LINDESNGQE HHLKHIPSPT FVTMGGHLEP NSQMELVGHS  60
IVLTSHPYTD PQYGGMFTSY GAQAMVPQLY GMPHARMPLP LEMEEEPVYV NAKQFHGIMR  120
RRQARAKAEL EKKAVKVRKP YLHESRHQHA MRRARGCGGR FLNTKKLDNN ATSPTSEKGS  180
GDLNSSGDLE EGKESMVRGM QTPASSNGHG LSARYHSSSH DGSFLGQQKE TTHGNRVSNG  240
AVSIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20105169266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2739s0010.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464897.11e-146nuclear transcription factor Y subunit A-7
RefseqXP_024464898.11e-146nuclear transcription factor Y subunit A-7
TrEMBLA0A2I4KKY31e-145A0A2I4KKY3_POPTR; NF-YA family protein
TrEMBLU5G6331e-145U5G633_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27300.11e-134(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.38e-26nuclear factor Y, subunit A1