PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2739s0010.7.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 203aa    MW: 22251 Da    PI: 9.9177
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2739s0010.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.54.1e-3262118158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hA+rR+Rg+gGrF
  SapurV1A.2739s0010.7.p  62 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 118
                             69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-3660121IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.82661121IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-2863118IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-246486IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606686IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-2495118IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGGHLEPNSQ MELVGHSIVL TSHPYTDPQY GGMFTSYGAQ AMVPQLYGMP HARMPLPLEM  60
EEEPVYVNAK QFHGIMRRRQ ARAKAELEKK AVKVRKPYLH ESRHQHAMRR ARGCGGRFLN  120
TKKLDNNATS PTSEKGSGDL NSSGDLEEGK ESMVRGMQTP ASSNGHGLSA RYHSSSHDGS  180
FLGQQKETTH GNRVSNGAVS IH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-2162126266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2739s0010.7.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464897.11e-133nuclear transcription factor Y subunit A-7
RefseqXP_024464898.11e-133nuclear transcription factor Y subunit A-7
TrEMBLA0A2I4KKY31e-132A0A2I4KKY3_POPTR; NF-YA family protein
STRINGPOPTR_0001s27300.11e-125(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-26nuclear factor Y, subunit A1