PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2860s0030.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 173aa MW: 18292.6 Da PI: 6.3351

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2860s0030.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.9	3.7e-10	31	70	58	97
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l SapurV1A.2860s0030.2.p 31 ALSLLFEACGRTVNPVNGAVGLLWSGNWHVCQEAVETVLS 70 569*******************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	20	No hit	No description
Pfam	PF03195	6.3E-6	31	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPKVTLPCFS PNFLAVVISC LSSPPYPNPN ALSLLFEACG RTVNPVNGAV GLLWSGNWHV 60 CQEAVETVLS GGALRPLHGI LTGFLAPNCD ESSDGFSAAV HDMAWNQSKS FAKESNNEVV 120 SDHHVNPCLA RGIGGRGKRG REAVSFYTGG ESETISFESS GGDQKRLLNL FV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2860s0030.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301153.3	1e-82	LOB domain-containing protein 39
Swissprot	Q9SZE8	6e-24	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1L6K5D3	2e-82	A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like
STRING	POPTR_0002s12020.1	3e-81	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-26	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	SapurV1A.2860s0030.2.p