PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2875s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 244aa    MW: 28404 Da    PI: 8.1362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2875s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.53.2e-2071401128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksg..yW 83 
                             l pG+rF+P +eelv +yL +k+++  + ++  ++++ +y ++P ++  + ++ + ++++fF+  +k +++ +++ +r+++ g  +W
  SapurV1A.2875s0010.1.p   7 LLPGYRFNPYEEELVRFYLYPKLTNPCFATSAPVRDCSLYAYQPLQIWnTFHRIHGEDVFFFTDLRKMSPKsNNNVSRKIAGGpaTW 93 
                             579***********************9999888**************734445578899****99999986355667766654227* PP

                     NAM  84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +   kd+++ ++   + +++ l+k + +  +++p+   ++W+m ey+l
  SapurV1A.2875s0010.1.p  94 HREDKDRHIRVQidkNYSVTALRKGFSYR-NTQPHQPGCKWTMYEYSL 140
                             **********9977666679999999986.7888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-215155IPR003441NAC domain
PROSITE profilePS5100524.5847155IPR003441NAC domain
PfamPF023651.6E-139140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLTPIQLLPG YRFNPYEEEL VRFYLYPKLT NPCFATSAPV RDCSLYAYQP LQIWNTFHRI  60
HGEDVFFFTD LRKMSPKSNN NVSRKIAGGP ATWHREDKDR HIRVQIDKNY SVTALRKGFS  120
YRNTQPHQPG CKWTMYEYSL PSLSEVTVLC QLRRKDNDKT HQSTQKNKKR KRAGAHGVDD  180
AENTESLTSE VVDHHPESEV SEDYSDWIQS FPPAAQQANP TCSMIHENRI QMIPNTFFMD  240
CFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152171RRKDNDKTHQSTQKNKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2875s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317507.31e-110NAC domain-containing protein 13
TrEMBLA0A2K1YJ481e-108A0A2K1YJ48_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12190.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.12e-12NAC with transmembrane motif1