PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2933s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 149aa MW: 16427 Da PI: 7.4355

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2933s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	86.1	9.8e-27	10	78	2	70
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee 70 d+ seq+Cyv+Cn C+t+lavsvP tsl+k+vtvrCGhCt+ll vn++ a + l++++ + SapurV1A.2933s0010.1.p 10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLYKTVTVRCGHCTNLLPVNMRGLLFPSANQFPLGHNFYSP 78 57789*****************************************99988777666666677776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.0E-27	14	69	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSSSSSLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLY KTVTVRCGHC TNLLPVNMRG 60 LLFPSANQFP LGHNFYSPSH NLLDGQIPNP TPNFLINQTN VNDFSLTIRG MAAPELPRPP 120 VMNRRENHRI LLFSLLLFCQ ESLFTSLG*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2933s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018257.1	3e-71	PREDICTED: protein YABBY 4-like
Swissprot	Q01JG2	8e-29	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	8e-29	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A438ESG8	4e-70	A0A438ESG8_VITVI; Protein YABBY 5
STRING	POPTR_0001s00240.1	4e-70	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2040	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	2e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2933s0010.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]