PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2972s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YC

Protein Properties

Length: 217aa MW: 24965.6 Da PI: 6.3982

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2972s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	112.1	2.9e-35	47	145	2	96
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 l +fw++q i ++t k h lPlarik+++k+d +vkmisae+P+l++kacelfileltlr+wl++ +krrtl+++ i+ av SapurV1A.2972s0020.1.p 47 LDQFWNQQlleIYNSTASKsSHLLPLARIKRVIKSDGEVKMISAETPILFAKACELFILELTLRAWLQTTACKRRTLQRCHISRAVR 133 789***866444555554899*************************************************************9 PP NF-YC 85 rtdifdflvdiv 96 + + l+++v SapurV1A.2972s0020.1.p 134 EEGMLRKLLNRV 145 998887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.84E-24	5	139	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-29	61	133	IPR009072	Histone-fold
Pfam	PF00808	2.0E-16	70	132	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDLNQSIEFD QASADPSPQE DGKAMPMNPS MLPHHQITTK ERREQNLDQF WNQQLLEIYN 60 STASKSSHLL PLARIKRVIK SDGEVKMISA ETPILFAKAC ELFILELTLR AWLQTTACKR 120 RTLQRCHISR AVREEGMLRK LLNRVVLCDH DKEDDVATEC LEEMESLHNM QTPFPFFDLK 180 GEVMADRHRE EPRQLMIKPP MPSSDFTPGF SSKWAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	1e-24	47	145	19	117	HapE
4g92_C	1e-24	47	145	19	117	HapE
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2972s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444106.1	1e-112	nuclear transcription factor Y subunit C-2
Swissprot	Q655V5	3e-27	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2K1X6V1	1e-110	A0A2K1X6V1_POPTR; Uncharacterized protein
STRING	POPTR_0005s15090.1	3e-77	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14399	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-29	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	SapurV1A.2972s0020.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]