PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3003s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 123aa    MW: 13892 Da    PI: 8.8835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3003s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.7e-11491188
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk 83
                            f kvl  +d+  +  l++p +++e+        +s++l+++d+ g+   +++  +k++++     vl++GW +Fv + gL +gD vv+ 
  SapurV1A.3003s0030.1.p  4 FSKVL--KDTDVRVKLSFPTHCLEHLdfA--GSNSVDLRIKDSCGELRVIRC--WKRKNGghdkPVLSSGWLKFVADYGLGVGDKVVLL 86
                            56777..4444455699999999666763..34789*********9999999..4444333578***********************99 PP

                            E-SSS CS
                      B3 84 ldgrs 88
                            +++++
  SapurV1A.3003s0030.1.p 87 REDDH 91
                            76553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-13392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-13398IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-163103No hitNo description
PfamPF023621.2E-8492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MQIFSKVLKD TDVRVKLSFP THCLEHLDFA GSNSVDLRIK DSCGELRVIR CWKRKNGGHD  60
KPVLSSGWLK FVADYGLGVG DKVVLLREDD HSLGSQFRIE ARRKIMLLGE ETWGEVTRAT  120
NY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3003s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303154.38e-66uncharacterized protein LOC7480761
TrEMBLA0A2K2B0472e-64A0A2K2B047_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01220.16e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414