PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3034s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 344aa    MW: 38360.6 Da    PI: 8.4654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3034s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-12162209355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  SapurV1A.3034s0010.1.p 162 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 209
                             6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17163221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-13164213No hitNo description
SMARTSM003531.5E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
METSSITSLS ELGMEDSSFT NQWYNMNSLD DTSLLPFSAA FGDNMHDQYS FSHQNFNLKT  60
SMDTTPATIS TVRPTKQLKT DHFPNPQSAF PPNILSFFNS NHANHMGLMK PKEEAVCSKS  120
ISNLPSDMVV SQDSFGNQNY VFKSSQGPKR INTNGTRLSQ SQDHIIAERK RREKLSQRFI  180
ALSAVVPGLK KMDKASVLGD AIKYLKQLQD KVHTLEEQTK RKTMESVIIV KKSHIYADDG  240
DGNSSSDLSK GPVIIHETAL PELEARFCDK HVLIRIHCKK NKGVLEKTVA EVEKLHLSVT  300
NSSVLAFGTS ALDVTIIAQM DVDFSMSVRD LVKTLRSAFQ YFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14163218863Transcription factor MYC2
5gnj_B3e-14163218863Transcription factor MYC2
5gnj_E3e-14163218863Transcription factor MYC2
5gnj_F3e-14163218863Transcription factor MYC2
5gnj_G3e-14163218863Transcription factor MYC2
5gnj_I3e-14163218863Transcription factor MYC2
5gnj_M3e-14163218863Transcription factor MYC2
5gnj_N3e-14163218863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3034s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300300.30.0transcription factor bHLH18
RefseqXP_024463812.10.0transcription factor bHLH18
RefseqXP_024463821.10.0transcription factor bHLH18
RefseqXP_024463825.10.0transcription factor bHLH18
RefseqXP_024463830.10.0transcription factor bHLH18
TrEMBLA0A2K2C5920.0A0A2K2C592_POPTR; Uncharacterized protein
STRINGPOPTR_0001s29400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-66bHLH family protein