PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3085s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 249aa MW: 28084.1 Da PI: 6.7256

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3085s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.2	1.1e-88	1	247	127	373
GRAS 127 aLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 +LlqaLa+Rp+g+p++RiTg+++p s+ + + le+++ rL+ + +++++p+ef+ v d++ e+L+v+pgEalaVn+ lqlh SapurV1A.3085s0020.1.p 1 SLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEAVAGRLSAISDKFNIPVEFHG-VPVFAPDVTKETLDVRPGEALAVNFPLQLH 86 79********************999999**********************.6888999******************* PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+ +eri+vE+++l+r+ vnv+ SapurV1A.3085s0020.1.p 87 HTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLPRDRKERISVEQHCLARDMVNVI 173 *********************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+erhe ++kW++r+++aGF+++pls+++++ +++llr+++ + y++ e++++++lgWkdr+L+s+SaW SapurV1A.3085s0020.1.p 174 ACEGKERVERHELFRKWKSRFMMAGFEQYPLSSYVNSVIRSLLRTYS-EHYTLVEKDEAMLLGWKDRSLISASAW 247 *******************************************.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.158	1	229	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-86	1	247	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
SLLQALAARP GGAPHVRITG IDDPVSKYAR GDGLEAVAGR LSAISDKFNI PVEFHGVPVF 60 APDVTKETLD VRPGEALAVN FPLQLHHTPD ESVDVNNPRD GLLRMIKSFN PKVVTLVEQE 120 SNTNTTPFVT RFVETLNYYL AMFESIDVTL PRDRKERISV EQHCLARDMV NVIACEGKER 180 VERHELFRKW KSRFMMAGFE QYPLSSYVNS VIRSLLRTYS EHYTLVEKDE AMLLGWKDRS 240 LISASAWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-41	1	248	126	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3085s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016013.1	1e-176	PREDICTED: scarecrow-like protein 21
Refseq	XP_011048259.1	1e-176	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	1e-133	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2K2CBZ3	1e-173	A0A2K2CBZ3_POPTR; Uncharacterized protein
STRING	POPTR_0001s44090.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF38800	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-114	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3085s0020.1.p

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]