PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3101s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 174aa MW: 19382.8 Da PI: 6.5077

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3101s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.8e-19	22	74	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++ql+ Le+ F+ n++++ae+++eLA++lg++ rqV +W+qNrRa++k+ SapurV1A.3101s0010.1.p 22 KRLGSDQLTLLEASFNANQKLKAEHKTELASQLGVPPRQVAIWYQNRRARHKN 74 457899*********************************************95 PP
2	HD-ZIP_I/II	97.6	1.2e-31	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +k+rl ++q++lLE sF++++kL+ e+K+ela++Lg+ prqva+W+qnrRAR+k+ +E+dy+ ++ ++ + +en rLe++v+ L+ SapurV1A.3101s0010.1.p 20 RKKRLGSDQLTLLEASFNANQKLKAEHKTELASQLGVPPRQVAIWYQNRRARHKNDVMEHDYKNIQLELGDVLAENIRLERQVSMLK 106 89************************************************************************************* PP HD-ZIP_I/II 89 eelke 93 +el++ SapurV1A.3101s0010.1.p 107 HELNQ 111 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.694	15	75	IPR001356	Homeobox domain
SMART	SM00389	9.9E-16	18	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.34E-16	20	82	IPR009057	Homeodomain-like
CDD	cd00086	1.95E-14	20	74	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-18	21	74	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-16	21	74	IPR001356	Homeobox domain
PRINTS	PR00031	1.4E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MNSHLHNQSQ SQCNQPLKPR KKRLGSDQLT LLEASFNANQ KLKAEHKTEL ASQLGVPPRQ 60 VAIWYQNRRA RHKNDVMEHD YKNIQLELGD VLAENIRLER QVSMLKHELN QVQQMILLGP 120 TSSSATLLSV SGSSDEQANS GSPANMICNW GDAGNDDIFP VEELYTCMID SGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3101s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372763.1	1e-107	homeobox-leucine zipper protein ATHB-52
TrEMBL	U5FHZ5	1e-105	U5FHZ5_POPTR; Uncharacterized protein
STRING	POPTR_0017s04820.1	1e-107	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16535	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-22	homeobox protein 52

Link Out ? help Back to Top
Phytozome	SapurV1A.3101s0010.1.p