PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3204s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 217aa MW: 24748.3 Da PI: 7.1676

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3204s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.3e-26	52	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+ SapurV1A.3204s0030.1.p 52 FYDEYARQIGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHP 138 9************************************999999989************************************* PP FAR1 89 la 90 l+ SapurV1A.3204s0030.1.p 139 LV 140 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-24	52	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDVDERVDIA ESSIGNELVE HGGELVEHGG DDMVVEPHEG MVFDSEDAAK IFYDEYARQI 60 GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFGN VRKPRPSTRE GCKAMIHVKF 120 DKSGKWVITK FVKDHNHPLV VAPREARQTL DEKDKKIQEL TAELRNKKRL CATYQEQLAA 180 FVKIVEDHSE KLSKKVKNVV ENLKEFESIE QELMPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3204s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444552.1	1e-153	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024448822.1	1e-153	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3N7G3V3	1e-151	A0A3N7G3V3_POPTR; Uncharacterized protein
STRING	POPTR_0017s05820.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-102	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3204s0030.1.p