PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3204s0030.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 185aa MW: 21342.7 Da PI: 9.8035

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3204s0030.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	20	108	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+ SapurV1A.3204s0030.2.p 20 FYDEYARQIGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHP 106 9************************************999999989************************************* PP FAR1 89 la 90 l+ SapurV1A.3204s0030.2.p 107 LV 108 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	20	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MVVEPHEGMV FDSEDAAKIF YDEYARQIGF VMRVMSCRRS ERDGRILARR LGCNKEGYCV 60 SIRGKFGNVR KPRPSTREGC KAMIHVKFDK SGKWVITKFV KDHNHPLVVA PREARQTLDE 120 KDKKIQELTA ELRNKKRLCA TYQEQLAAFV KIVEDHSEKL SKKVKNVVEN LKEFESIEQE 180 LMPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3204s0030.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	1e-169	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444552.1	1e-129	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024448822.1	1e-129	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	3e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3N7G3V3	1e-128	A0A3N7G3V3_POPTR; Uncharacterized protein
STRING	POPTR_0017s05820.1	1e-129	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-101	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3204s0030.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]