PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3361s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 191aa MW: 21427.8 Da PI: 10.1462

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3361s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.5e-33	67	120	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ SapurV1A.3361s0010.1.p 67 PRLRWTPHLHHCFVHAVESLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 120 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.944	63	123	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-31	63	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.4E-15	64	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-24	67	121	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-6	68	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRKLEIESSV NKGPASSSPD HTGDDHAMKS SPDDIIRVTE RGVVGVSSRE INLKSATVRP 60 YVRSKTPRLR WTPHLHHCFV HAVESLGGED RATPKMVLQI MDVKGLTISH VKSHLQMYRS 120 MKHEQMIQAL KIIPCTLCQK VIIHEKNYIK AGTVIRQGYL AGYLCSENKR SNSITKIDSV 180 YFFKNNSINS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3361s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149575	4e-44	AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383901.2	1e-57	myb family transcription factor PHL12
TrEMBL	B9RXJ2	6e-47	B9RXJ2_RICCO; DNA binding protein, putative
STRING	POPTR_0004s01060.1	1e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3361s0010.1.p