PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3377s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 232aa MW: 25225 Da PI: 4.6716

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3377s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.6e-09	2	26	20	46
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 G++ W++Ia+ ++ gRt++++k++w++ SapurV1A.3377s0010.2.p 2 GSR-WSLIAAQLP-GRTDNDVKNYWNT 26 788.*******.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.496	1	32	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-13	2	38	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.03E-8	2	37	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	2	26	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-6	4	28	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGSRWSLIAA QLPGRTDNDV KNYWNTKLKK KILVGKISLS IKNSSTNAPP ASVTNIPTIP 60 CSTSPILYIP KAETESTVTF SDHYSLTQSS GAFPTLSDAG YEPVISSTTQ NWSQNHFQYS 120 SFPGIVDMSE FRASSMNSHI VSPSQEGSTM SDSSSLAMDY KGLSLPSTHG GPEEVGILMD 180 SELGFPSDFV NDLLFQDRES EVAANCFQYF ADYGYVDMKP QGLNQGVTNH Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3377s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015974.1	1e-128	PREDICTED: transcription factor RAX2-like
Refseq	XP_011019548.1	1e-128	PREDICTED: transcription factor RAX2-like
TrEMBL	B9HE03	1e-113	B9HE03_POPTR; Uncharacterized protein
STRING	POPTR_0006s25060.1	1e-113	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-16	myb domain protein 36

Link Out ? help Back to Top
Phytozome	SapurV1A.3377s0010.2.p