PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3412s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 120aa    MW: 14056.2 Da    PI: 10.1602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3412s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.63e-106101496
                             E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                             +l++++ +k++rl +p + + ++   +g+  +s++ +  d+  + W++k+++r+ ++    +l++ W ++v+ +gL+ gD v+ + d
  SapurV1A.3412s0010.1.p   6 KLLSNSDTKHKRLEFPARSLPAFpipEGQ--NSMEFVAFDRVRKPWNFKVSIRNEGRYlkPWLSGEWADYVRRKGLRKGDKVIMTTD 90 
                             455677778889********999776555..688999999999*******988888778899***********************88 PP

                             SSSEE..EEEE CS
                      B3  86 grsefelvvkv 96 
                             ++++++ + ++
  SapurV1A.3412s0010.1.p  91 DEENGNNRYHI 101
                             87888776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-12594IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-76102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-10693IPR015300DNA-binding pseudobarrel domain
CDDcd100178.31E-11693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVAMSKLLSN SDTKHKRLEF PARSLPAFPI PEGQNSMEFV AFDRVRKPWN FKVSIRNEGR  60
YLKPWLSGEW ADYVRRKGLR KGDKVIMTTD DEENGNNRYH IIAVSKLFGF WYCIDQQWV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3412s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048022.13e-51PREDICTED: uncharacterized protein LOC105142200
TrEMBLB9NBH42e-60B9NBH4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01140.14e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1531737