PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3527s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 249aa    MW: 27803.7 Da    PI: 10.2228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3527s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.95.9e-34141411128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tksgyWk 84 
                             lp G+rFhPtdeelvv+yLk+kv g +l++ +vi+e+d+++ +P++Lp  +   +++ yfF++++ +    krk+ a   + sgyWk
  SapurV1A.3527s0010.1.p  14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-SVIPEFDVFQNNPSSLPGDL---KEKRYFFCQKKLNGLGTKRKKTAggsAPSGYWK 96 
                             699***************************.99***************554...4578****99887654444444444455***** PP

                     NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               gk k+++++ ++++vg +ktL+f + +++  + ++W+mhey l
  SapurV1A.3527s0010.1.p  97 RIGKGKQIVASdSNQAVGRRKTLAFKERNHSFKTTSQWFMHEYCL 141
                             ********99867778**********999999999********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3911167IPR003441NAC domain
PROSITE profilePS5100539.81614167IPR003441NAC domain
PfamPF023657.7E-2315141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKPNFVDNG RFKLPIGYRF HPTDEELVVH YLKRKVLGLP LPASVIPEFD VFQNNPSSLP  60
GDLKEKRYFF CQKKLNGLGT KRKKTAGGSA PSGYWKRIGK GKQIVASDSN QAVGRRKTLA  120
FKERNHSFKT TSQWFMHEYC LVGLATDPKT STQIEVGDWV ACSVFQRKRK PRNNVVRSNS  180
SNVSKTRTVE IIGPRFIMDF TMEQSSDGVG PPSPCSSGVT EVSSDEVDRE EISSAISLFS  240
YPCNGKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-211116817169NAC domain-containing protein 19
3swm_B3e-211116817169NAC domain-containing protein 19
3swm_C3e-211116817169NAC domain-containing protein 19
3swm_D3e-211116817169NAC domain-containing protein 19
3swp_A3e-211116817169NAC domain-containing protein 19
3swp_B3e-211116817169NAC domain-containing protein 19
3swp_C3e-211116817169NAC domain-containing protein 19
3swp_D3e-211116817169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3527s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699960.0KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373134.11e-135NAC domain-containing protein 83
TrEMBLB9N0W91e-134B9N0W9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s09030.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-43NAC domain containing protein 83