PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3530s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 191aa MW: 21629.8 Da PI: 10.3272

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3530s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.8e-09	87	133	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i ++ L++l+P + ++ Ka iL + +++++sL SapurV1A.3530s0010.1.p 87 SHSLAERARREKISAKMRLLQSLVPGC----DGITGKAHILDEIIRHVQSL 133 8***********************9....9***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-14	81	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.40E-6	81	138	No hit	No description
PROSITE profile	PS50888	14.246	83	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-15	84	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	87	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-6	89	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVVGTPDYRE EDQVIQAVTP TMGQMRKQSL PTRKVKRESK REKLPKSSVS RKLERVKPTK 60 RQKTVPPAEL PAGYVHVRAR RGEATDSHSL AERARREKIS AKMRLLQSLV PGCDGITGKA 120 HILDEIIRHV QSLKDRVESL EAELVLVNET AINDFKMSYN MEAQAWHELF SSELQFLSDL 180 EPGSSHFKRS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3530s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452218.1	1e-100	transcription factor bHLH63 isoform X1
Swissprot	Q9FJL4	3e-31	BH078_ARATH; Transcription factor bHLH78
Swissprot	Q9LK48	2e-31	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A3N7E7N8	9e-99	A0A3N7E7N8_POPTR; Uncharacterized protein
STRING	POPTR_0003s16300.1	4e-55	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16101	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3530s0010.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]