PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3536s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 257aa    MW: 29899.8 Da    PI: 8.557
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3536s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.66.3e-20201531128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksg..yW 83 
                             l pG+rF+P +eelv +yL +k+++  + ++  ++++ +y ++P ++  + ++ + ++++fF+  +k +++ +++ +r+++ g  +W
  SapurV1A.3536s0010.1.p  20 LLPGYRFSPYEEELVRFYLYPKLTNPCFATSAPVRDCSLYAYQPLQIWnTFHRIHGEDIFFFTDLRKMSPKsNNNVSRKIAGGpaTW 106
                             579***********************9999888**************734445578899****99999886355667766654227* PP

                     NAM  84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +   kd+++ ++   + +++ l+k + +  +++p+   ++W+m ey+l
  SapurV1A.3536s0010.1.p 107 HREDKDRHIRVQidkNYSVTALRKGFSYR-NTQPHQPGCKWTMYEYSL 153
                             **********9977666679999999986.7888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-2213168IPR003441NAC domain
PROSITE profilePS5100524.49420168IPR003441NAC domain
PfamPF023652.5E-1322153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMIMTRSQSQ TLTMLTPIQL LPGYRFSPYE EELVRFYLYP KLTNPCFATS APVRDCSLYA  60
YQPLQIWNTF HRIHGEDIFF FTDLRKMSPK SNNNVSRKIA GGPATWHRED KDRHIRVQID  120
KNYSVTALRK GFSYRNTQPH QPGCKWTMYE YSLPSLSEVT VLCQLRRKDN DKTHQSTQKN  180
KKRKRAGAHG VDDAQNTESL TSEVVDHHPE SEVSEDYSDW IQSFPPAAQQ ANPTCSMIHE  240
NRIQMIPNTF FMDCFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165184RRKDNDKTHQSTQKNKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3536s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317507.31e-113NAC domain-containing protein 13
TrEMBLA0A2K1YJ481e-112A0A2K1YJ48_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12190.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.16e-13NAC with transmembrane motif1