PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3542s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 229aa    MW: 25888 Da    PI: 9.4322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3542s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-161998287
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                            fkv   +d+l++g l+lp kf++++g++    + l     +g+ We++l  +k++g+++l+kGWkeF++   +  g f+vF+++g+
  SapurV1A.3542s0010.1.p 19 FKVI-LEDSLREGKLMLPQKFVTRYGMDL---TNLAHLKVHGEAWEIEL--TKCDGKVWLQKGWKEFAEHYSVACGHFLVFEYEGN 98
                            5554.589999999***********9883...35777788*********..********************************987 PP
2B361.11.8e-19133217188
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff v ++s++l+++ +++p +f+e++ +  +   + ++ + + rsW+vkli r +++  vl++GW +F+++n Lk+gD++ F+++++
  SapurV1A.3542s0010.1.p 133 FFEVVIRSSYLARSFVCVPMSFVERYFKHIN---QFVMLQVEDRSWSVKLITRSSQRVAVLSAGWARFARENSLKVGDVCAFEMINN 216
                             889999********************54433...477778888*******76666666*************************8875 PP

                             S CS
                      B3  88 s 88 
                              
  SapurV1A.3542s0010.1.p 217 G 217
                             4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-201398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-191499IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-131697No hitNo description
PROSITE profilePS5086310.54617107IPR003340B3 DNA binding domain
SMARTSM010193.2E-1018114IPR003340B3 DNA binding domain
PfamPF023623.8E-131898IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-23129225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-21130226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-18133225No hitNo description
SMARTSM010192.7E-16133227IPR003340B3 DNA binding domain
PfamPF023622.2E-17133217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69133227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGEGDAKPSV LVAKPPHFFK VILEDSLREG KLMLPQKFVT RYGMDLTNLA HLKVHGEAWE  60
IELTKCDGKV WLQKGWKEFA EHYSVACGHF LVFEYEGNLP GQFGKPELIN SSSSVLLTRG  120
SETESKFIST RPFFEVVIRS SYLARSFVCV PMSFVERYFK HINQFVMLQV EDRSWSVKLI  180
TRSSQRVAVL SAGWARFARE NSLKVGDVCA FEMINNGVLK AIISRSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1411921634130B3 domain-containing transcription factor VRN1
4i1k_B1e-1411921634130B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3542s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028430.12e-57PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X4
TrEMBLA0A3N7F2D55e-55A0A3N7F2D5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23920.11e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-19B3 family protein