PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3567s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 456aa    MW: 52860.9 Da    PI: 4.9491
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3567s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.25.7e-1039119185
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                             +Wt +e l L++    +e++  ++ +  ++W+ + +++  + + r+ +qC+ kw++l ++y  ik+++k+ +s+s     ++ +l
  SapurV1A.3567s0020.1.p  39 EWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVQDVARNLNQCRTKWNSLLNEYNLIKDWDKESESRS----DFYWSL 119
                             5********************************************************************964433....466666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-838120No hitNo description
Gene3DG3DSA:1.10.10.605.5E-43997IPR009057Homeodomain-like
PROSITE profilePS500906.7714096IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEVIVNKKKR RKEQRENKNN NQLRGSSSTP RTRSKVSPEW TTKEALILVN EIAAVEKDCL  60
KALSTYQKWK IIVDNCVVQD VARNLNQCRT KWNSLLNEYN LIKDWDKESE SRSDFYWSLE  120
SERRKEFGLP ENFNEELFRA IDDYMWCHKE HPDPDPDPDT DSEKPDLLHA ITNLGAKKQR  180
WRSKSLKTWK EEKTHKCCGE DNSQTIHAEE KPQERCVEEN SQIYCIVEKP EGVCAEEEHQ  240
VSQVQESTQT YYAEGKLQTI LAEEDPQESC AEEEPHTIHA EEEPGESPAE EHPQPCCSKE  300
KPRTIHLEEE TQERCLEENH QTCCANEKPQ SVPAETQLQE SHVLERPQKR HRKEKSENAH  360
GDEKPKVHRG HKKKMPSTEE MEQMMVEKLR ENAEMIQTVV NGNFPELADL EAADSKNIEG  420
FKTDLIRSQG EKLIACLQNI VNSISQFPCL LQECD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610KKKRR
2611KKKRRK
3711KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3567s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474660.0EF147466.1 Populus trichocarpa clone WS01231_H23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006656.10.0PREDICTED: uncharacterized protein LOC105112613 isoform X1
TrEMBLA0A2K2A9F80.0A0A2K2A9F8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-43sequence-specific DNA binding transcription factors