PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3634s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 781aa    MW: 87570.1 Da    PI: 8.1721
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3634s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.46.8e-29465514352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++isle+l++yF++++kdAA++Lgvc+T+LKriCRq+GIkRWP+Rkik++
  SapurV1A.3634s0010.1.p 465 QTISLEVLRQYFAGSLKDAAQSLGVCPTTLKRICRQHGIKRWPSRKIKKV 514
                             79**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.859450534IPR003035RWP-RK domain
PfamPF020425.9E-26466514IPR003035RWP-RK domain
SuperFamilySSF542771.21E-18683772No hitNo description
SMARTSM006665.8E-17687770IPR000270PB1 domain
PROSITE profilePS5174517.752687770IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.6E-18688767No hitNo description
PfamPF005647.9E-13690769IPR000270PB1 domain
CDDcd064075.45E-34690769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MQAVGYLKNC IQDRDILIQI WLPMEKEGKR VLATIDQPYF VNPSCKSLAS YRKVSTAYHF  60
QAEGDPQSSV GFPGRVFLEK LPEWTPDVRL FRREEYPHTD HAVQHNIRGS LALPLFKQGS  120
DQTCLGIVEI ATTIQKISYR PELQDICKAL QAVHLRSSED FCSPGVETCN RSIQVAVPEM  180
SDIVKSVCKT YRLPLALTWA LCSRQGKSRR QQLPERFSSC ISTVDSACFL ADRDFSGFHA  240
ASFEHYLFLG QGIVGRAFTT QKQCFSNDIT SYSKKDYPLA HHAKIFGVHA AIAIPLRSIS  300
TGFVEFVLEL FLPKDCQETE EQKKMWDLLP VTIKHVCRSL QVVMDKEVDE GEKQSFESSP  360
SKEAPPDESS WIARMVEAQK KGKSCFVTWD YPKEPIEEFK TITHWDGSAV EIDQKQVISE  420
WSEFQQNSRP NSRVEGDGVS SDFFGRHSLG SRKTGKKRRT KTEIQTISLE VLRQYFAGSL  480
KDAAQSLGVC PTTLKRICRQ HGIKRWPSRK IKKVDHSLRK LQLVIDTVQG AKGGFQIESF  540
YSAFPELSSP KLSSHTSYSS FRRIDNSKHL DSPPGDSSPC GTASKSHSSP CSRSSCSSNC  600
CSARGQQHAA TTITGPGNGN GSIVAETSNG ILKRSCSGEL EELHSLNNQG EPDFLVRSQI  660
HKVNDHIHRS ELESRPGFGQ SLREGGVFGV KAIFGVEKVR LGLQPKWGLG ELKQEIGKRF  720
EIDDFTGIGL KYMDDDGEWV RLTCDGDLEE CKEIHRFSHR NTIKISLHEH SSSFCFRGSF  780
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455460KKRRTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3634s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464227.10.0protein NLP2 isoform X1
TrEMBLB9HPY40.0B9HPY4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein