PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3648s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 258aa MW: 28922.5 Da PI: 5.9086

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3648s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.2	3.5e-45	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp G+rF Pt+eelv++yL +k+eg++ el++vi+e++iy++ePwdLp+ +++++++w+fF++ + ++a+g r+nr+t+sgyW SapurV1A.3648s0010.1.p 4 LPIGYRFYPTEEELVSFYLDNKLEGRRQELQHVIPEIRIYDIEPWDLPQlsgeLCQGNTEQWFFFTPMQAREARGGRPNRSTASGYW 90 699*************************999**********9656754455778*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ + v+s++++++gl kt+vfy g+ap+g+kt+W m+eyr+ SapurV1A.3648s0010.1.p 91 KATGSPRYVYSSDNQVIGLMKTMVFYMGKAPSGRKTKWKMNEYRA 135 *****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-48	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	47.864	4	161	IPR003441	NAC domain
Pfam	PF02365	5.3E-23	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEELPIGYRF YPTEEELVSF YLDNKLEGRR QELQHVIPEI RIYDIEPWDL PQLSGELCQG 60 NTEQWFFFTP MQAREARGGR PNRSTASGYW KATGSPRYVY SSDNQVIGLM KTMVFYMGKA 120 PSGRKTKWKM NEYRAIGAHG LSRNATPKLR HEFSLCRVYV VSGSFRAFDR RPLGAVAGET 180 QHPLGVPHAG DAATTSAQNL MIVEMTSSPE TSYSGEDHVD NPGTAAGASW GLLDGLEPPE 240 WEWPEQLHCP GTDRFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-36	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-36	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-36	4	159	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-36	4	159	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-36	4	159	20	166	NAC domain-containing protein 19
3swm_B	4e-36	4	159	20	166	NAC domain-containing protein 19
3swm_C	4e-36	4	159	20	166	NAC domain-containing protein 19
3swm_D	4e-36	4	159	20	166	NAC domain-containing protein 19
3swp_A	4e-36	4	159	20	166	NAC domain-containing protein 19
3swp_B	4e-36	4	159	20	166	NAC domain-containing protein 19
3swp_C	4e-36	4	159	20	166	NAC domain-containing protein 19
3swp_D	4e-36	4	159	20	166	NAC domain-containing protein 19
4dul_A	3e-36	4	159	17	163	NAC domain-containing protein 19
4dul_B	3e-36	4	159	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3648s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003860.1	1e-141	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-84	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K1Z1D1	1e-138	A0A2K1Z1D1_POPTR; Uncharacterized protein
STRING	POPTR_0001s22630.1	1e-137	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-82	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	SapurV1A.3648s0010.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]