PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3760s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 159aa    MW: 18530 Da    PI: 9.871
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3760s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.2e-3851041100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk +rrkC +dC++apyfpae++++f++vhk FG +nv+++l++lp ++r+da+ slvyeA+ar+rdPv G++++i++l+q++
  SapurV1A.3760s0020.1.p   5 SCAACKNHRRKCDDDCFIAPYFPAEKSRDFEAVHKHFGLHNVISILRSLPLQQRSDAVFSLVYEANARVRDPVGGCTRIISALRQRI 91 
                             6************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++lka+l+ +k++
  SapurV1A.3760s0020.1.p  92 NTLKAQLNFVKNQ 104
                             ********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6884105IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-375102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRRPSCAACK NHRRKCDDDC FIAPYFPAEK SRDFEAVHKH FGLHNVISIL RSLPLQQRSD  60
AVFSLVYEAN ARVRDPVGGC TRIISALRQR INTLKAQLNF VKNQNAYYRT MKQQQLRQQN  120
MVHNAGFVDF LRENNFPSSN QDFNLLHENL ENPQQLQNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2869912105LOB family transfactor Ramosa2.1
5ly0_B9e-2869912105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3760s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458812.15e-87LOB domain-containing protein 12
SwissprotQ9SHE93e-29LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3N7F5N51e-85A0A3N7F5N5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24470.12e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2312934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-31LOB domain-containing protein 4