PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3841s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 88aa MW: 10207.7 Da PI: 9.0763

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3841s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++lvd+++++G g+W++ ++ g+ R++k+c++rw++yl SapurV1A.3841s0010.1.p 13 KGAWSQQEDQKLVDYIQKHGEGCWRSLPQAAGLLRCGKSCRLRWRNYL 60 79****************************99***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-24	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.712	8	64	IPR017930	Myb domain
SMART	SM00717	7.0E-14	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-17	13	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.49E-22	14	87	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-10	15	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-6	63	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MRKPCCDKQH TNKGAWSQQE DQKLVDYIQK HGEGCWRSLP QAAGLLRCGK SCRLRWRNYL 60 RPDLKRDGFG EDEEDLIIRL HALLGNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-15	12	87	26	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3841s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000470.1	9e-60	PREDICTED: myb-related protein 308-like
Refseq	XP_011000471.1	9e-60	PREDICTED: myb-related protein 308-like
Refseq	XP_011012518.1	9e-60	PREDICTED: myb-related protein 308-like
Refseq	XP_011012519.1	9e-60	PREDICTED: myb-related protein 308-like
Swissprot	Q38851	2e-45	MYB6_ARATH; Transcription repressor MYB6
TrEMBL	B9IEA0	2e-57	B9IEA0_POPTR; Uncharacterized protein
STRING	POPTR_0015s04300.1	3e-58	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	8e-48	myb domain protein 6

Link Out ? help Back to Top
Phytozome	SapurV1A.3841s0010.1.p