PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3862s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 223aa MW: 24774.7 Da PI: 10.466

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3862s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	157.5	1.1e-48	62	188	23	160
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeev 109 +vsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ + ++ +l + ++ ++++ s + + +++ ++ e++e SapurV1A.3862s0010.1.p 62 MVSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP---QSQKLVLLNSEDLNKDFGSSSKCN-------KVNASESTEHHEP 138 69*********************************996...333334444444444444332221.......1222234567889 PP YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn SapurV1A.3862s0010.1.p 139 PRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 188 99999.9*****************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-50	62	191	IPR006780	YABBY protein
SuperFamily	SSF47095	7.96E-6	143	185	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVPFQSSRFQ SPLPPPSLSI TVLAIVLLLS PSFCVRAKVS IAPKGKGYGG GERERREAFK 60 SMVSVPSSSL FNIVTVRCGH CGNLLSVNMG ASSQTLPLQD PQSQKLVLLN SEDLNKDFGS 120 SSKCNKVNAS ESTEHHEPPR MPPIRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA 180 FSTAAKNVRK YLNFIIYNNK HLHARQFTIL ISLFLLIILC YN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3862s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	1e-158	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453762.1	3e-77	axial regulator YABBY 5 isoform X3
Swissprot	Q9XFB0	3e-41	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A9PGB2	7e-76	A9PGB2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-73	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-36	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3862s0010.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]