PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3862s0010.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 171aa MW: 19278.2 Da PI: 10.1559

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3862s0010.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	151	1.1e-46	13	136	24	160
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 vsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ ++ +l + ++ ++++ s + + + ++s ++ e++e p SapurV1A.3862s0010.4.p 13 VSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP-----QKLVLLNSEDLNKDFGSSSKCN---KV-NAS---ESTEHHEPP 87 9********************************9996.....2223334444444444332221...11.112...345668899 PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 r+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn SapurV1A.3862s0010.4.p 88 RMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 136 9999.9*****************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.5E-50	13	139	IPR006780	YABBY protein
SuperFamily	SSF47095	4.89E-6	91	133	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MGKKDALTYR EKVSVPSSSL FNIVTVRCGH CGNLLSVNMG ASSQTLPLQD PQKLVLLNSE 60 DLNKDFGSSS KCNKVNASES TEHHEPPRMP PIRPPEKRQR VPSAYNRFIK DEIQRIKAGN 120 PDISHREAFS TAAKNVRKYL NFIIYNNKHL HARQFTILIS LFLLIILCYN *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3862s0010.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	1e-142	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	8e-77	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	2e-41	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	2e-75	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-76	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-37	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3862s0010.4.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]