PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3862s0010.5.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 133aa MW: 15171.4 Da PI: 10.1645

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3862s0010.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	109.8	5.1e-34	30	98	91	160
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 s+s+ ++++ ++ e++e pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aakn SapurV1A.3862s0010.5.p 30 SSSKCNKVNASESTEHHEPPRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNV 98 333333444445566778889888.9*******************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-32	17	101	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-6	52	95	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MGASSQTLPL QDPQKLVLLN SEDLNKDFGS SSKCNKVNAS ESTEHHEPPR MPPIRPPEKR 60 QRVPSAYNRF IKDEIQRIKA GNPDISHREA FSTAAKNVRK YLNFIIYNNK HLHARQFTIL 120 ISLFLLIILC YN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3862s0010.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	6e-98	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	2e-56	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	5e-28	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2I4KKA6	1e-55	A0A2I4KKA6_POPTR; YABBY family protein
TrEMBL	A0A2K2C1G2	5e-55	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	7e-56	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.2	8e-22	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.3862s0010.5.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]