PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4018s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 392aa    MW: 44327.9 Da    PI: 7.7944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4018s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06127147526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+ f+r G C +G++C F+Hg
  SapurV1A.4018s0020.1.p 127 ACPEFRR-GGCGRGENCEFSHG 147
                             7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638123149IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-5127147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.662157181IPR000571Zinc finger, CCCH-type
SMARTSM003568.6157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSTICAEQHK LYLLSPKKPF KDLDQILSRK LFTKKTHQES TLEMSPYDET NLRRFLPCND  60
HYSFEKQVVL DEDELDPYSS DHFRMYEFKV RRCTRSRSHD WTECPFAHPG EKARRRDPRR  120
FHYSGTACPE FRRGGCGRGE NCEFSHGVFE FWLHPSRYRT EACKDGMNCK RKICFFAHSP  180
RQLRILPEVS SHNKSLASPC SSLNHSPCCV SCHSMISTSS PTSTLLGRSH MSPPLSPSLS  240
SPPLSPVKHQ SLSGFSPISR YNETLSQFRA GVVSYRDVLA ELMSSLEAMN FNERASVSSP  300
MSSLSSNHSR NIDSSATPWS IDVSFHGEDQ PQFILSPSTP TLSSRFFNGD CSGRKVDLFI  360
DDRINDRNII GDGGLACTSD PDLGWVNELL M*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4018s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372730.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA11e-84C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLU5FMC60.0U5FMC6_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-70C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]