PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4018s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 391aa    MW: 44120.6 Da    PI: 7.9252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4018s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06126146526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+ f+r G C +G++C F+Hg
  SapurV1A.4018s0030.1.p 126 ACPEFRR-GGCGRGENCEFSHG 146
                             7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638122148IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-5126146IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.662156180IPR000571Zinc finger, CCCH-type
SMARTSM003568.6156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSTICAEQHK LYLLSPKKPF KDLDQILSRK LFTKKTHQES TLEMSPYDET NLRRFLPCND  60
HYSIEKQVLD EDELDPYSSD HFRMYEFKVR RCTRSRSHDW TDCPFAHPGE KARRRDPRRF  120
HYSGTACPEF RRGGCGRGEN CEFSHGVFEF WLHPSRYRTE ACKDGMNCKR KICFFAHSPR  180
QLRILPEVSS HNKSLASPCS SLNHSPCCVS CHSMISTSSP TSTLLGRSHM SPPLSPSLSS  240
PPLSPVKHQS LSGFSPISRY NETLSQFRAG VVSYRDVLAE LMSSLEAMNF NERASVSSPM  300
SSLSSNHSRN IASSATPWSI DVSFHGEDQP QFILSPSTPT PSSRFFNGDC SGRKVDLFID  360
DRINDRNIIG DGGLACTSDP DLGWVNELLM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4018s0030.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372730.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA12e-85C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLU5FMC60.0U5FMC6_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.19e-65C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]