PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4100s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 266aa    MW: 30013.8 Da    PI: 10.3107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4100s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.25.1e-11158179122
                             ---SS-EEEEEEE--TT-SS-E CS
                    WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                             ldDgy+WrKYGqK+vk++++pr
  SapurV1A.4100s0010.1.p 158 LDDGYKWRKYGQKVVKNTQHPR 179
                             59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-13143180IPR003657WRKY domain
SuperFamilySSF1182901.24E-9150180IPR003657WRKY domain
PROSITE profilePS5081112.84153179IPR003657WRKY domain
SMARTSM007742.7E-4158201IPR003657WRKY domain
PfamPF031062.4E-7159180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAASQASTL NQQALFEDQE VPAQMAGFFS FPAHLTYPQL GSCHQSFKGF IIPPSLAADA  60
PTTTSLAETL PLSSATHNKQ REGTIASDLG GPHLLSLQRS HANLWAWGEV NECLNRKRSG  120
SGEDHLGLST IKMKKIKARR KVREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRL  180
DIQIKHQYIL SPHKVHITLD FRFALVILSH KLIMCCVLSL SRSLSRSLSS FSLLLSLWLG  240
FTVLSRRFLW INIMRECRSY RCILN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4100s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452931e-164EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310044.11e-115probable WRKY transcription factor 13
TrEMBLB9HG521e-113B9HG52_POPTR; WRKY family protein
STRINGPOPTR_0007s06930.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-27WRKY DNA-binding protein 13