PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.4240s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 463aa MW: 51171 Da PI: 5.195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.4240s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.1e-13	257	303	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N +++ Lr l+P++ K++ a+++ A++YIk+L SapurV1A.4240s0010.1.p 257 TKHFATERQRREHLNGKYDSLRNLVPNP-----SKNDRASVVGDAINYIKEL 303 68***********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.74E-15	253	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.63E-12	255	308	No hit	No description
Pfam	PF00010	1.2E-10	257	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	257	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-11	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MCEETACFEP NNSVVEGGDD DGFCQVLPFM TGSSTTNSFE ESLKISMEEF SNQYHQGESA 60 AASMEEIQLQ HQMAFNNNCH HLMEQYPTNH HQVLSYDHTS NWDPNFIQFQ EMHQVLDQNG 120 NFNAAANTPS SMLPDLLSLF SLPRCTSTST LLPNSSISFT NPAHKTPSGF MGVDSTSVLF 180 DSNPLAPQFT ELVQSLPPHG YSLPAPLFGG GQGDDQVDGL SGGGLSYQDG GHGEGVFEFT 240 AEMACIGKGI RKTGKVTKHF ATERQRREHL NGKYDSLRNL VPNPSKNDRA SVVGDAINYI 300 KELLRTVEEL KLLVEKKRYG RERIKRHKTE EDGGVDVLEN SDMKIEQDQS AYNNGSLRSS 360 WLQRKSKHTE VDVRLIEDEV TIKLVQRKKV NCLLSVSKVL DELQLDLQHA AGGLIGDYHS 420 FLFNTKINEG SCVYASGIAN KLLEVVDRQY ASSTTVPAGS CF*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MCEETACFEP NNSVVEGGDD DGFCQVLPFM TGSSTTNSFE ESLKISMEEF SNQYHQGESA  60
AASMEEIQLQ HQMAFNNNCH HLMEQYPTNH HQVLSYDHTS NWDPNFIQFQ EMHQVLDQNG  120
NFNAAANTPS SMLPDLLSLF SLPRCTSTST LLPNSSISFT NPAHKTPSGF MGVDSTSVLF  180
DSNPLAPQFT ELVQSLPPHG YSLPAPLFGG GQGDDQVDGL SGGGLSYQDG GHGEGVFEFT  240
AEMACIGKGI RKTGKVTKHF ATERQRREHL NGKYDSLRNL VPNPSKNDRA SVVGDAINYI  300
KELLRTVEEL KLLVEKKRYG RERIKRHKTE EDGGVDVLEN SDMKIEQDQS AYNNGSLRSS  360
WLQRKSKHTE VDVRLIEDEV TIKLVQRKKV NCLLSVSKVL DELQLDLQHA AGGLIGDYHS  420
FLFNTKINEG SCVYASGIAN KLLEVVDRQY ASSTTVPAGS CF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.4240s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308327.3	0.0	transcription factor bHLH91
TrEMBL	A0A2K2A576	0.0	A0A2K2A576_POPTR; Uncharacterized protein
STRING	POPTR_0006s21660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	4e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.4240s0010.1.p