PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.4333s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 225aa MW: 25361.4 Da PI: 7.346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.4333s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.5e-10	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq SapurV1A.4333s0010.1.p 159 SHSIAERVRREKINNKLRCLQDLVPGC----HKSMGMAVMLEEIINYVHSLQ 206 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-17	153	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.31E-10	153	210	No hit	No description
PROSITE profile	PS50888	15.243	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-17	155	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-7	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-9	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MPEFAEYQQR FRPSQPLTEM MNVNMEILKH LSDLNPSILE NFSTAEFSAD SLLAHQQPEF 60 TTYNHNNLSS TFHPDILSTT TAVHTVTLNQ NGTHETKKRK SKEQSTRSYK NISPTGSSNE 120 TKKKNNLGGG KKGENRDKEV DQTEEVIHVR AKRGQATDSH SIAERVRREK INNKLRCLQD 180 LVPGCHKSMG MAVMLEEIIN YVHSLQNQVE FLSMELATAS CSVE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.4333s0010.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383447.1	1e-137	transcription factor bHLH75
TrEMBL	U5GG63	1e-136	U5GG63_POPTR; Uncharacterized protein
STRING	POPTR_0005s15590.1	1e-136	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14412	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.4333s0010.1.p