PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5380s0010.12.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 395aa    MW: 43730.8 Da    PI: 10.036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5380s0010.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.6e-08279327348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                              +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.5380s0010.12.p 279 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 327
                              7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545272331IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-12274334IPR009057Homeodomain-like
SMARTSM007172.9E-7276329IPR001005SANT/Myb domain
CDDcd116603.32E-18278328No hitNo description
SuperFamilySSF466891.4E-15278337IPR009057Homeodomain-like
PfamPF002491.1E-5279327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGLTNSCDVS VTSFIIKDNK LVKKENEEIS NCMDGSYAED QPIGNQKDLL TSLNQLDYHQ  60
VVPEKRMENP SLDDNSGSDD HQTEQRAAKR VRKPTKRYIE ELSEVEPKES NGRLMNLAKN  120
SGHGLISLKS HVRPVRNVIL GGRTVVTRLD SLGGYGIEVP CVSRVRRSRP RKNFMALLKF  180
NPSGTGTEAT SIKKAFGDHS FPPDDGKESR VLKVISTPEH VHNQFIGVPE KDKQFSVMSA  240
IGLGHNMELK CMNSSGDSDD NVVTVPTPKG GIRRKHHRAW TLCEVMKLVE GVSSYGAGRW  300
SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS LAQTPQDNGM NSRKNTGAMP IPAPILLKVR  360
ELAEMQAQAL PNLSSTKIAG SPRKNVHEKQ TGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5380s0010.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453601.10.0uncharacterized protein LOC7475702 isoform X4
RefseqXP_024453605.10.0uncharacterized protein LOC7475702 isoform X7
TrEMBLA0A2K2B2G30.0A0A2K2B2G3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-74TRF-like 6