PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5380s0010.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 548aa    MW: 60645 Da    PI: 8.8259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5380s0010.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07432480348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.5380s0010.5.p 432 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 480
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545425484IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-12427487IPR009057Homeodomain-like
SMARTSM007172.9E-7429482IPR001005SANT/Myb domain
CDDcd116605.34E-18431481No hitNo description
SuperFamilySSF466892.26E-15431490IPR009057Homeodomain-like
PfamPF002491.8E-5432480IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLQKVKEEQR LRLACGSPYC SSAYLIVDSQ CCDQHDKFLH IDEKLQCVIP LQETVPSLAP  60
SLSESHFNQS GSAGECSHSS DNLVAAGSTS SAVTTKPDFS KLKGEICLDN LSIKELHETF  120
KATFGRETTV KDKQWLKRRI SMGLTNSCDV SVTSFIIKDN KLVKKENEEI SNCMDGSYAE  180
DQPIGNQKDL LTSLNQLDYH QVVPEKRMEN PSLDDNSGSD DHQTEQRAAK RVRKPTKRYI  240
EELSEVEPKE SNGRLMNLAK NSGHGLISLK SHVRPVRNVI LGGRTVVTRL DSLGGYGIEV  300
PCVSRVRRSR PRKNFMALLK FNPSGTGTEA TSIKKAFGDH SFPPDDGKES RVLKVISTPE  360
HVHNQGDACH CLLDLKEFIG VPEKDKQFSV MSAIGLGHNM ELKCMNSSGD SDDNVVTVPT  420
PKGGIRRKHH RAWTLCEVMK LVEGVSSYGA GRWSEIKRLA FASYSYRTSV DLKDKWRNLL  480
KASLAQTPQD NGMNSRKNTG AMPIPAPILL KVRELAEMQA QALPNLSSTK IAGSPRKNVH  540
EKQTGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5380s0010.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453605.10.0uncharacterized protein LOC7475702 isoform X7
TrEMBLA0A2K2B2H70.0A0A2K2B2H7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-105TRF-like 6