PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5380s0010.9.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 454aa    MW: 50309.2 Da    PI: 9.5549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5380s0010.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07338386348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v  +G g+W+ I r        Rt  ++k++w+++l
  SapurV1A.5380s0010.9.p 338 AWTLCEVMKLVEGVSSYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 386
                             7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545331390IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-12333393IPR009057Homeodomain-like
SMARTSM007172.9E-7335388IPR001005SANT/Myb domain
CDDcd116604.69E-18337387No hitNo description
SuperFamilySSF466891.72E-15337396IPR009057Homeodomain-like
PfamPF002491.4E-5338386IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGLTNSCDVS VTSFIIKDNK LVKKENEEIS NCMDGSYAED QPIGNQKDLL TSLNQLDYHQ  60
VVPEKRMENP SLDDNSGSDD HQTEQRAAKR VRKPTKRYIE ELSEVEPKES NGRLMNLAKN  120
SGHGLISLKS HVRPVRNVIL GGRTVVTRLD SLGGYGIEVP CVSRVRRSRP RKNFMALLKF  180
NPSGMGTEAM LVKKVHGDHS FPPDDEKESR VFLKANSTPE HVHHQKFNPS GTGTEATSIK  240
KAFGDHSFPP DDGKESRVLK VISTPEHVHN QGDACHCLLD LKEFIGVPEK DKQFSVMSAI  300
GLGHNMELKC MNSSGDSDDN VVTVPTPKGG IRRKHHRAWT LCEVMKLVEG VSSYGAGRWS  360
EIKRLAFASY SYRTSVDLKD KWRNLLKASL AQTPQDNGMN SRKNTGAMPI PAPILLKVRE  420
LAEMQAQALP NLSSTKIAGS PRKNVHEKQT GFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5380s0010.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453602.10.0uncharacterized protein LOC7475702 isoform X5
RefseqXP_024453603.10.0uncharacterized protein LOC7475702 isoform X5
TrEMBLA0A3N7EML80.0A0A3N7EML8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-65TRF-like 6