PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.6591s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 309aa    MW: 34613.4 Da    PI: 6.4215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.6591s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-182673148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  SapurV1A.6591s0010.1.p 26 RGPWTVEEDFNLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 73
                            89********************************************97 PP
2Myb_DNA-binding49.69.4e-1679122146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  SapurV1A.6591s0010.1.p  79 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.572173IPR017930Myb domain
SuperFamilySSF466897.86E-3124120IPR009057Homeodomain-like
SMARTSM007171.9E-152575IPR001005SANT/Myb domain
PfamPF002492.3E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-222780IPR009057Homeodomain-like
CDDcd001672.57E-122873No hitNo description
PROSITE profilePS5129422.70774128IPR017930Myb domain
SMARTSM007172.6E-1478126IPR001005SANT/Myb domain
PfamPF002491.8E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2381127IPR009057Homeodomain-like
CDDcd001673.14E-1183122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMDVKGSSNS SSTTQSDEEM TGDLRRGPWT VEEDFNLINY IATHGEGRWN SLARCAGLKR  60
TGKSCRLRWL NYLRPDVRRG NITLEEQLMI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLIERIQAAA SATSASPAAT VSAPATDHHS  180
VSNSDVGTGN LVMAPHGVDG NDFGVSQFTQ SYTPENSNTV ASSDSFAAQV SPVSDLTADY  240
NNIPVNRNTN PDYIQPGQVS YSESMISPPG FFNHGLDFQA MEHSSNQWLM GSGDTSDNMW  300
NLEDIWFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2541205120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.6591s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE11e-93MY108_ARATH; Transcription factor MYB108
TrEMBLB9HIK10.0B9HIK1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.16e-93myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]