PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.6879s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 327aa MW: 34582.4 Da PI: 9.4179

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.6879s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.2e-38	68	127	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprCdstntkfCy+nny+ sqPr+fCk+CrryWt+GGalr vPvGgg+r+nkks+ SapurV1A.6879s0010.2.p 68 EVALKCPRCDSTNTKFCYFNNYNFSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKSK 127 6689*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	51	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-32	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MVFSSAPFYL DPPNWQQQPG QQPGASNETP QLPPLPPPAH VGGGGTAGSI RPGSMADRAR 60 LAKIPHPEVA LKCPRCDSTN TKFCYFNNYN FSQPRHFCKT CRRYWTRGGA LRSVPVGGGC 120 RRNKKSKSQS SSKSTVSSER EVGSTSSSTS ALPSEVSGHL PHQPSQLPFM SSLQNLAQFG 180 EGNIGLNFGG IQGQLGSTSG PSSGQADMGF PIGINSGMSG SALLSAGGVH QFPFFEFSPS 240 GLYPLQSEGA ETPINVNGDS QLQSMTSSSR VSQLAPVKTE GNQGLNLSKA PYSGTVVPQN 300 NQYYWGGNTW TDLSGLNSSF TSHLFR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.6879s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000263.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBL	A0A2K2C2N4	0.0	A0A2K2C2N4_POPTR; Uncharacterized protein
STRING	POPTR_0001s24540.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	4e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.6879s0010.2.p