PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.6879s0010.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 295aa    MW: 31346.8 Da    PI: 9.6005
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.6879s0010.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56.1e-3869128362
                  zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                             e alkcprCdstntkfCy+nny+ sqPr+fCk+CrryWt+GGalr vPvGgg+r+nkks+
  SapurV1A.6879s0010.3.p  69 EVALKCPRCDSTNTKFCYFNNYNFSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKSK 128
                             6689*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3452124IPR003851Zinc finger, Dof-type
PfamPF027014.8E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.34872126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVFSSAPFYL DPPNWQQQQP GQQPGASNET PQLPPLPPPA HVGGGGTAGS IRPGSMADRA  60
RLAKIPHPEV ALKCPRCDST NTKFCYFNNY NFSQPRHFCK TCRRYWTRGG ALRSVPVGGG  120
CRRNKKSKSQ SSSKSTVSSE RENLAQFGEG NIGLNFGGIQ GQLGSTSGPS SGQADMGFPI  180
GINSGMSGSA LLSAGGVHQF PFFEFSPSGL YPLQSEGAET PINVNGDSQL QSMTSSSRVS  240
QLAPVKTEGN QGLNLSKAPY SGTVVPQNNQ YYWGGNTWTD LSGLNSSFTS HLFR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.6879s0010.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000263.11e-165PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBLA0A2K2C2N41e-163A0A2K2C2N4_POPTR; Uncharacterized protein
TrEMBLA0A3S9LK651e-163A0A3S9LK65_POPTO; Dof-type zinc finger DNA-binding family protein
STRINGPOPTR_0001s24540.11e-163(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-44Dof family protein