PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G050400.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 466aa    MW: 49478.7 Da    PI: 8.9048
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G050400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.1e-11139179343
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Seita.1G050400.3.p 139 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 179
                         67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-5137190IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-8137183No hitNo description
PROSITE profilePS502178.979139183IPR004827Basic-leucine zipper domain
PfamPF001701.1E-8140179IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7141184No hitNo description
PROSITE patternPS000360144159IPR004827Basic-leucine zipper domain
PfamPF141445.9E-27225310IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIQAASSSAH GGIIKEPGGG YDMAEFDQAL FLYLNSQDQT SAAHHQDQPQ TLNIFPSQPM  60
HIAEPAPKGS MGTSNTAPIA GAGPSKQPPP PSNHPSRPTP AALKDGKPAG VKREGSSGAA  120
TGSGTPSTSN QQEGPRTPDA KTLRRLAQNR EAARKSRLRK KAYIQNLETS RIRLSQLEQE  180
LHRSRNQGAV FGGGALSGSN GGLSPEAAWF DMEHARWQEE HGKMMRHLRA ALEAADQQHP  240
AAPAPAPAAD AQLRQLVDAA AAHHGVLADL KAAVASADAF HLVSGAWASA AERCFLWIGG  300
FRPSELIKVA ARHAEPLTEP QAMGVCGVQQ WAREAEAALD HELQAMHRSV SEAVSSDAAA  360
LLCPYSDVPG YMATMSLAIA KLASLEAFVR QADALRLQAL HRLPQILTAR QAARCFLAIA  420
DYSHRLRALS ELWHTRPRHE PVATIPAAGP SHGQPFQSSR AGGLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G050400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513162e-57EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0transcription factor TGAL9 isoform X2
RefseqXP_004951578.10.0transcription factor TGAL9 isoform X3
SwissprotQ52MZ21e-145TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PH070.0A0A368PH07_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-102bZIP family protein