PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G050400.6.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 486aa    MW: 51769.2 Da    PI: 8.8903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G050400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.3e-11159199343
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Seita.1G050400.6.p 159 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 199
                         67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8157203No hitNo description
SMARTSM003386.4E-5157210IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979159203IPR004827Basic-leucine zipper domain
PfamPF001701.2E-8160199IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7161204No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
PfamPF141446.3E-27245330IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIRKEPGGG YDMAEFDQAL FLYLNSQDQT  60
SAAHHQDQPQ TLNIFPSQPM HIAEPAPKGS MGTSNTAPIA GAGPSKQPPP PSNHPSRPTP  120
AALKDGKPAG VKREGSSGAA TGSGTPSTSN QQEGPRTPDA KTLRRLAQNR EAARKSRLRK  180
KAYIQNLETS RIRLSQLEQE LHRSRNQGAV FGGGALSGSN GGLSPEAAWF DMEHARWQEE  240
HGKMMRHLRA ALEAADQQHP AAPAPAPAAD AQLRQLVDAA AAHHGVLADL KAAVASADAF  300
HLVSGAWASA AERCFLWIGG FRPSELIKVA ARHAEPLTEP QAMGVCGVQQ WAREAEAALD  360
HELQAMHRSV SEAVSSDAAA LLCPYSDVPG YMATMSLAIA KLASLEAFVR QADALRLQAL  420
HRLPQILTAR QAARCFLAIA DYSHRLRALS ELWHTRPRHE PVATIPAAGP SHGQPFQSSR  480
AGGLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G050400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513162e-57EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0transcription factor TGAL9 isoform X2
SwissprotQ52MZ21e-146TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PHI60.0A0A368PHI6_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-102bZIP family protein