PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G060600.1.p
Common NameLOC101783399, SETIT_020494mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 306aa    MW: 33035.2 Da    PI: 6.2467
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G060600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-072552882154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  Seita.1G060600.1.p 255 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 288
                         469*****************************87 PP
2ELK26.91.1e-09209230122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++L+++Y+++L+++++E++
  Seita.1G060600.1.p 209 ELKNELKQGYKEKLVDIREEIL 230
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194488IPR005540KNOX1
PfamPF037901.4E-164784IPR005540KNOX1
SMARTSM012566.2E-2698153IPR005541KNOX2
PfamPF037914.5E-16106152IPR005541KNOX2
PROSITE profilePS5121310.057209229IPR005539ELK domain
PfamPF037891.8E-6209230IPR005539ELK domain
SMARTSM011880.0023209230IPR005539ELK domain
PROSITE profilePS5007111.353229292IPR001356Homeobox domain
SuperFamilySSF466897.7E-16231294IPR009057Homeodomain-like
SMARTSM003893.4E-10231296IPR001356Homeobox domain
CDDcd000861.62E-11232293No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24236293IPR009057Homeodomain-like
PfamPF059208.3E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSFHYPDHGL TMDAAAAAAA AAAAAAAASS PNPSGFSPGG VGGEREKAAI AAHPLYERLL  60
EAHVACLRVA TPVDQLPRID AQIAARPPPL AAAAGAAAAG GPSGGEELDL FMTHYVLLLC  120
SFKEQLQQHV RVHAMEAVMG CWELEQSLQS LTGASPGEGT GATMSDDEDN QVDSEANMFD  180
GNEGSDGMGF GPLMLTEGER SLVERVRQEL KNELKQGYKE KLVDIREEIL RKRRAGKLPG  240
DTASILKAWW QAHSKWPYPT EDDKARLVQE TGLQLKQINN WFINQRKRNW HSNPTSSGEK  300
TKKKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285304RKRNWHSNPTSSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G060600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951667.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLK3Z1S60.0K3Z1S6_SETIT; Uncharacterized protein
STRINGSi020494m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-144KNOTTED1-like homeobox gene 3