PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G068600.2.p
Common NameLOC101778683, SETIT_017778mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 315aa    MW: 33288.9 Da    PI: 5.2066
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G068600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.2e-17141193358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Seita.1G068600.2.p 141 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 193
                         68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18139203IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185141193IPR004827Basic-leucine zipper domain
PfamPF001703.1E-14142191IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-13142194No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13143194No hitNo description
CDDcd147025.49E-23144194No hitNo description
PROSITE patternPS000360146161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKKCASELEL EAFIRSREDA AAAAVAAAEH KPGHDIAAQA AFGAGVFSPG DLSGFSFADS  60
NTLNGSIPNH VWSHNHNVRH PAVSTTIESQ SSICAASPTS ATNLYLKESQ TLGGTSGSDS  120
DSESLLDIEG GPCEQSTNPQ DVKRMRRMVS NRESARRSRK RKQAHLADLE TQVDQLRGEN  180
ASLFKQLTDA NQQFTTAVTD NRILKSDVEA LRVKVKLAED MVARGALTCG LGSLGLSPVL  240
NPRQACRGPD VLSGLDFAGD DPCFAGLSPT EQVQNSPLQS IASLESLENR IASEVTSCGG  300
PGVDVWPWDG GLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRSRKRK
2155162RRSRKRKQ
3157162SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G068600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBankJX4699220.0JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951741.10.0bZIP transcription factor RISBZ4 isoform X2
SwissprotQ6H5001e-139RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLK3YUA00.0K3YUA0_SETIT; Uncharacterized protein
STRINGSi017778m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-44basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]